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Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance

Venue: PLoS Biology
Publication year: 2024
Schema: articlestory.v1

The story so far…

Short impact summary

Published in 2024 in PLoS Biology, “Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance” contributes to understanding influenza A virus mutations. With 58 citations to date and a citing landscape featuring prominent venues like npj Viruses and Nature Communications, the article engages diverse research types including articles and preprints. Although open access status is unknown, uptake is evidenced across virology and influenza-related concepts, highlighting its relevance for virus surveillance and antigenic drift studies.

Full narrative

This article, titled “Deep mutational scanning of H5 hemagglutinin to inform influenza virus surveillance,” was published on November 12, 2024, in PLoS Biology by a multidisciplinary team including researchers from Fred Hutch Cancer Center, University of Washington, University of Pennsylvania, Imperial College London, and other institutions. The author group features notable contributors such as Bernadeta Dadonaite and Jesse D. Bloom, reflecting a broad institutional collaboration across US and UK research centers. The work is positioned at the intersection of biology and virology, addressing influenza virus mutations and surveillance.

The research is grounded in key scientific concepts, prominently biology (score 0.83), hemagglutinin (influenza) (0.78), and virology (0.73), indicating its focus on viral mutation and phenotype characterization. Other concepts such as influenza A virus, mutation, antigenic drift, and neutralization further contextualize the study within viral evolution and immune response research. This conceptual framework situates the work squarely in efforts to understand influenza virus antigenic changes and their implications for public health surveillance.

The article has accrued 58 citations, reflecting recognition within the scientific community. Its citing works span multiple forms, including 29 articles, 18 preprints, and 7 reviews, showing a mix of original research and synthesis. Top citing venues include npj Viruses (3), Proceedings of the National Academy of Sciences (2), Nature Communications (2), and Nature (2), highlighting engagement by leading journals. The dominant citing concepts include virology (21) and influenza A virus subtype H5N1 (19), with the United States contributing 35 citing works, pointing to significant uptake within key influenza research hubs.

Online mentions recorded via Crossref Event Data are limited, with just one newsfeed mention, suggesting modest yet visible public or media footprint shortly after publication. While the event data is sparse, this single newsfeed trace indicates some early communication beyond purely academic channels. Further evidence from a scite report shows 19 total citation statements, with no contradicting citations and one supporting statement, reinforcing a generally favorable scientific reception without controversial or disputing discourse detected so far.

The article’s open access status and a direct publisher landing page are not available, limiting immediate public accessibility assessment. The absence of a best open access full-text link suggests that reuse potential outside subscription or institutional access may be restricted at this time. This could impact the broader dissemination of its findings, particularly outside specialized academic circles or resource-rich institutions.

Considering the citation landscape comprising a substantial number of preprints (18) alongside articles and reviews, the uptake pattern suggests the article is contributing to ongoing, rapidly evolving influenza research dialogues. This distribution, coupled with numerous citing works in high-impact journals such as Nature Communications and PNAS, is consistent with a foundational role for informing subsequent studies on viral mutation and antigenic characterization. Qualitative follow-up via scite or bibliometric analyses could further elucidate the nature and influence of these citations over time.

Impact metrics

Inferred roles

Heuristic classification from citation composition / usage signals. Not based on full text.

High-visibility uptake (0.70)Rapid uptake (0.62)Reference point for synthesis (0.36)Active discussion signal (0.28)

Citation context scite

Citing landscape OpenAlex

Concepts & topics OpenAlex

  • Biology
  • Hemagglutinin (influenza)
  • Virology
  • Virus
  • Mutation
  • Influenza A virus
  • Neutralization
  • Phenotype
  • Antigenic drift
  • Mutagenesis
  • Sialic acid
  • Gene
  • Genetics

Access

Citations OpenAlex

YearTitleVenueDOI
2026Management of critical illness in an adolescent caused by highly pathogenic avian influenza A(H5N1) virus infection in British Columbia, CanadaThe Lancet Infectious Diseases10.1016/s1473-3099(25)00773-x scite
2026Functional and antigenic constraints on the Nipah virus fusion proteinProceedings of the National Academy of Sciences10.1073/pnas.2529505123 scite
2026Loss of α2,3-linked sialoside in the receptor-binding site of a H5N1 influenza hemagglutinin identified in a human patient10.64898/2026.01.19.700419 scite
2026Influenza hemagglutinin subtypes have different sequence constraints despite sharing extremely similar structures10.64898/2026.01.05.697808 scite
2025Nonviral protein cages as tools to decipher and combat viral threatsnpj Viruses10.1038/s44298-025-00127-8 scite
2025Impact of naturally occurring hemagglutinin substitutions on antigenicity and fitness of influenza A(H5N1) virusnpj Viruses10.1038/s44298-025-00154-5 scite
2025Balancing stability and function: impact of the surface charge of SARS-CoV-2 Omicron spike proteinnpj Viruses10.1038/s44298-025-00104-1 scite
2025Inverted H1 hemagglutinin nanoparticle vaccines protect mice against challenges with human H1N1 and bovine H5N1 influenza virusesnpj Vaccines10.1038/s41541-025-01276-w scite
2025Strategies and efforts in circumventing the emergence of antiviral resistance against conventional antiviralsnpj Antimicrobials and Resistance10.1038/s44259-025-00125-z scite
2025AbAgym: a well-curated dataset for the mutational analysis of antibody–antigen complexesmAbs10.1080/19420862.2025.2592421 scite
2025Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignmentVirus Evolution10.1093/ve/veaf058 scite
2025Attachment and replication of clade 2.3.4.4b influenza A (H5N1) viruses in human respiratory epithelium: an in-vitro studyThe Lancet Microbe10.1016/j.lanmic.2025.101230 scite
2025Structure of a zoonotic H5N1 hemagglutinin reveals a receptor-binding site occupied by an auto-glycanStructure10.1016/j.str.2025.01.001 scite
2025Preclinical Evaluation of an mRNA Vaccine Developed from the First Human Isolate of Bovine H5N1SSRN Electronic Journal10.2139/ssrn.5353082 scite
2025The Q226L mutation can convert a highly pathogenic H5 2.3.4.4e virus to bind human-type receptorsProceedings of the National Academy of Sciences10.1073/pnas.2419800122 scite
2025The sweet side of H5N1 influenza virus infectionPLoS Pathogens10.1371/journal.ppat.1012847 scite
2025Multiplexed assays of variant effect for clinical variant interpretationNature Reviews Genetics10.1038/s41576-025-00870-x scite
2025Cross-neutralizing and potent human monoclonal antibodies against historical and emerging H5Nx influenza virusesNature Microbiology10.1038/s41564-025-02137-x scite
2025Pleiotropic mutational effects on function and stability constrain the antigenic evolution of influenza haemagglutininNature Ecology & Evolution10.1038/s41559-025-02895-1 scite
2025Learning a viral protein’s vocabularyNature Ecology & Evolution10.1038/s41559-025-02928-9 scite
2025Host switching mutations in H5N1 influenza hemagglutinin suppress site-specific activation dynamicsNature Communications10.1038/s41467-025-66926-y scite
2025Lengthy delays in H5N1 genome submissions to GISAIDNature Biotechnology10.1038/s41587-025-02636-6 scite
2025Receptor-binding specificity of a bovine influenza A virusNature10.1038/s41586-025-08822-5 scite
2025Hemagglutinin-displaying influenza nanovaccines: progress and promiseNanomedicine10.1080/17435889.2025.2598329 scite
2025Decoding non-human mammalian adaptive signatures of 2.3.4.4b H5N1 to assess its human adaptive potentialMicrobiology Spectrum10.1128/spectrum.00948-25 scite
2025Experimental and computational approaches to adaptive viral evolution: Linking molecular variation to phenotypic outcomesJournal of Microbiological Methods10.1016/j.mimet.2025.107379 scite
2025H5N1 2.3.4.4b: a review of mammalian adaptations and risk of pandemic emergenceJournal of General Virology10.1099/jgv.0.002109 scite
2025Mutations in the influenza virus, primarily H5N1, enhance the virus’s virulence, favor receptor interaction, and increase drug resistanceInternational Journal of Surgery10.1097/js9.0000000000002403 scite
2025Immunological and virological questions for H5N1 pandemic emergenceImmunoHorizons10.1093/immhor/vlaf062 scite
2025Risk assessment of 2024 cattle H5N1 using age-stratified serosurveillance dataEmerging Microbes & Infections10.1080/22221751.2025.2497304 scite
2025Large-scale computational modelling of H5 influenza variants against HA1-neutralising antibodiesEBioMedicine10.1016/j.ebiom.2025.105632 scite
2025A review of the animal influenza viruses and their impact on human healthDiscover Public Health10.1186/s12982-025-00679-3 scite
2025Deep mutational scanning of rabies glycoprotein defines mutational constraint and antibody-escape mutationsCell Host & Microbe10.1016/j.chom.2025.04.018 scite
2025Insights from deep mutational scanning in the context of an emerging pathogenBiochemical Society Transactions10.1042/bst20253033 scite
2025The Q226L mutation can convert a highly pathogenic H5 2.3.4.4e virus to bind human-type receptors10.1101/2025.01.10.632119 scite
2025Targeted tiled amplicon based protocol for sequencing the Hemagglutinin (HA) gene segment of seasonal influenza A and influenza B virus from wastewater at high depth of coverage10.1101/2025.10.15.25338105 scite
2025Susceptibility of bovine respiratory and mammary epithelial cells to avian and mammalian derived clade 2.3.4.4b H5N1 highly pathogenic avian influenza viruses10.1101/2025.01.09.632235 scite
2025Stabilization of H5 highly pathogenic avian influenza hemagglutinin improves vaccine-elicited neutralizing antibody responses10.1101/2025.07.30.667762 scite
2025Seasonal influenza viruses show distinct adaptive dynamics during growth in chicken eggs10.1101/2025.06.12.659400 scite
2025Random mutagenesis of influenza hemagglutinin identifies new sites which modulate its acid-stability and cleavability10.1101/2025.07.25.666873 scite
2025Pleiotropic mutational effects on function and stability constrain the antigenic evolution of influenza hemagglutinin10.1101/2025.05.24.655919 scite
2025Mutational spectra reveal influenza virus transmission routes and adaptation10.1101/2025.11.26.690773 scite
2025Host Switching Mutations in H5N1 Influenza Hemagglutinin Suppress Site-specific Activation Dynamics10.1101/2025.10.06.680362 scite
2025H5N1 Influenza A is now promiscuous in host range and has improved replication in mammals10.1101/2025.03.15.641219 scite
2025Functional and antigenic constraints on the Nipah virus fusion protein10.1101/2025.10.15.682664 scite
2025Evaluating variant effect prediction across viruses10.1101/2025.08.04.668549 scite
2025A Fine-tuned ProtGPT2 (transformer model) for Predicting more Virulent SARS-CoV-2 variants and understanding its virulence by biophysical methods10.1101/2025.01.13.632691 scite
2024A single mutation in bovine influenza H5N1 hemagglutinin switches specificity to human receptorsScience10.1126/science.adt0180 scite
2024PLOS Biology and the life sciences in 2024PLoS Biology10.1371/journal.pbio.3002985 scite
2024Critical Illness in an Adolescent with Influenza A(H5N1) Virus InfectionNew England Journal of Medicine10.1056/nejmc2415890 scite
2024A single mutation in dairy cow-associated H5N1 viruses increases receptor binding breadthNature Communications10.1038/s41467-024-54934-3 scite
2024The global H5N1 influenza panzootic in mammalsNature10.1038/s41586-024-08054-z scite
2024Analysis of the Monophyletic Lineage of Avian Influenza H5N1 Which Circulated in Venezuelan Birds During the 2022–2023 OutbreakMicroorganisms10.3390/microorganisms12122519 scite
2024Predictive Modeling of Respiratory Virus Evolution: Current Capabilities and LimitationsMathematical Biology and Bioinformatics10.17537/2024.19.579 scite
2024Structure of a zoonotic H5N1 hemagglutinin reveals a receptor-binding site occupied by an auto-glycan10.1101/2024.12.06.626699 scite
2024Risk assessment of 2024 cattle H5N1 using age-stratified serosurveillance data10.1101/2024.12.23.24319580 scite
2024Receptor Binding Specificity of a Bovine A(H5N1) Influenza Virus10.1101/2024.07.30.605893 scite
2024Deep mutational scanning of rabies glycoprotein defines mutational constraint and antibody-escape mutations10.1101/2024.12.17.628970 scite